IQ-TREE multicore version 2.0.3 for Linux 64-bit built Apr 26 2020
Developed by Bui Quang Minh, Nguyen Lam Tung, Olga Chernomor,
Heiko Schmidt, Dominik Schrempf, Michael Woodhams.

Host:    cn47 (AVX2, FMA3, 125 GB RAM)
Command: /home/smg655/.conda/envs/iqtree/bin/iqtree -t All_Species_m2_genic_other_BS.nwk -s All_Species_m2_genic_other.nexus --scf 100 --prefix concord_genic_other -T 2
Seed:    800245 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Wed Apr  7 13:36:19 2021
Kernel:  AVX+FMA - 2 threads (2 CPU cores detected)

Reading alignment file All_Species_m2_genic_other.nexus ... Nexus format detected
Alignment has 26 sequences with 36602 columns, 21279 distinct patterns
36131 parsimony-informative, 0 singleton sites, 471 constant sites
WARNING: Some sequence names are changed as follows:
ActMar  TA -> ActMar__TA
AldGig  AA -> AldGig__AA
ApaSpi  AT -> ApaSpi__AT
BatTri  NN -> BatTri__NN
CarIns  AA -> CarIns__AA
CheAbi  AA -> CheAbi__AA
CheMyd  AA -> CheMyd__AA
CheSer  AA -> CheSer__AA
ChrPic  TA -> ChrPic__TA
CuoAmb  AA -> CuoAmb__AA
CuoMcc  AA -> CuoMcc__AA
DerCor  AA -> DerCor__AA
DerMaw  AA -> DerMaw__AA
EmyOrb  NN -> EmyOrb__NN
EmySub  AA -> EmySub__AA
GopAga  AA -> GopAga__AA
MalTer  TA -> MalTer__TA
MauRee  AA -> MauRee__AA
MesTub  AA -> MesTub__AA
PelCas  AA -> PelCas__AA
PelSin  AT -> PelSin__AT
PlaMeg  AA -> PlaMeg__AA
PodExp  TA -> PodExp__TA
SteCar  AA -> SteCar__AA
TerCar  TA -> TerCar__TA
TraScr  TA -> TraScr__TA

            Gap/Ambiguity  Composition  p-value
   1  ActMar__TA    1.40%    passed      6.43%
   2  AldGig__AA    1.66%    passed     43.66%
   3  ApaSpi__AT    3.34%    passed     70.19%
   4  BatTri__NN   48.12%    passed     28.04%
   5  CarIns__AA   12.04%    failed      0.07%
   6  CheAbi__AA    5.85%    passed     69.24%
   7  CheMyd__AA    0.76%    passed     10.71%
   8  CheSer__AA    3.71%    passed     21.85%
   9  ChrPic__TA    0.46%    passed     27.64%
  10  CuoAmb__AA    2.53%    passed     21.13%
  11  CuoMcc__AA    0.93%    passed     12.79%
  12  DerCor__AA    1.51%    passed     69.19%
  13  DerMaw__AA    2.33%    passed     93.43%
  14  EmyOrb__NN   41.43%    passed     31.69%
  15  EmySub__AA    2.11%    passed      6.15%
  16  GopAga__AA    0.89%    passed     53.72%
  17  MalTer__TA    6.60%    passed     32.32%
  18  MauRee__AA    0.64%    passed     31.26%
  19  MesTub__AA    3.50%    failed      4.16%
  20  PelCas__AA    5.44%    failed      0.00%
  21  PelSin__AT    4.15%    passed     34.16%
  22  PlaMeg__AA    0.73%    passed     10.63%
  23  PodExp__TA   14.46%    failed      0.00%
  24  SteCar__AA    3.33%    passed     36.63%
  25  TerCar__TA    1.89%    passed      5.83%
  26  TraScr__TA    0.84%    passed     24.72%
****  TOTAL         6.56%  4 sequences failed composition chi2 test (p-value<5%; df=3)
Reading tree All_Species_m2_genic_other_BS.nwk ...
un-rooted tree with 26 taxa and 49 branches
Computing site concordance factor...
0.327 sec
Tree with concordance factors written to concord_genic_other.cf.tree
Annotated tree (best viewed in FigTree) written to concord_genic_other.cf.tree.nex
Tree with branch IDs written to concord_genic_other.cf.branch
Concordance factors per branch printed to concord_genic_other.cf.stat
Date and Time: Wed Apr  7 13:36:20 2021
